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Australia’s Virtual Herbarium: 5 million records and counting

13 August, 2014

Australia’s Virtual Herbarium: 5 million records and counting

(re-published from the original available at http://avh.chah.org.au/index.php/news/)

An Australian online resource, which is proving invaluable for scientific research and conservation efforts here and overseas, reached a significant milestone this week.

Australia’s Virtual Herbarium (AVH, http://avh.chah.org.au/) – one of the world’s largest repositories of specimen-based botanical information – now contains over 5 million records.

“This milestone represents a mammoth collaborative effort from Australian herbaria, who have worked together for over 25 years to make the information associated with herbarium specimens easy to share and reuse by anyone, anywhere in the world”, said Kevin Thiele, Chair of the Council of Heads of Australasian Herbaria.

AVH brings together specimen data from many of Australia’s herbaria – specialised museums that house collections of dried plants, algae and fungi – and makes it freely available on the web, providing the most complete and up-to-date picture of Australia’s botanical diversity available. Combining these data sets and providing easy access to them expedites research and allows scientists to undertake large-scale research projects previously not possible.

AVH is delivered through the extensive infrastructure provided by the Atlas of Living Australia (ALA, http://ala.org.au/). Through the ALA, AVH data is linked to a large and growing number of environmental data sets, facilitating research that leads to a deeper understanding of Australia’s biodiversity.

AVH makes Australia uniquely placed to be a testing ground for new research methods. Recent research by Brent Mishler, a biology professor at the University of California, Berkeley, and colleagues at the Centre for Australian National Biodiversity Research in Canberra, used AVH data to develop and test methods for identifying areas of high genetic diversity, which may be in need of greater conservation protection.

“Australia presents the best current opportunity for studying large-scale patterns of diversity because of the nearly complete digitisation of herbarium collections by Australia’s Virtual Herbarium. These new landscape-scale methods are not feasible in the US until we have more herbarium data available”, said Mishler.

Using Australian acacias as an example, their research identified biologically important, but currently unprotected, areas in Western Australia and confirmed the significance of the world heritage listed Wet Tropics of Far North Queensland. “We now have a richer view of biodiversity that takes into account the number of species, their rarity in the landscape and the rarity of their close relatives”, Mishler said.

AVH data has also been applied to conservation efforts in other parts of the world. Researchers in South Africa have used herbarium specimen data to model the distribution of potentially weedy Australian species – including eucalypts, casuarinas and acacias – outside Australia and predict the likelihood that they will become invasive. “AVH data has been absolutely crucial for much of this work”, said David Richardson, Director of the Centre for Invasion Biology at Stellenbosch University.

The combined collections of Australian herbaria are estimated to exceed 7 million specimens and are expanding all the time. “Our herbaria are active research collections that are always growing. They contain specimens from the earliest European explorations of Australia to the most recent botanical expeditions. New specimens are added daily as botanists continue to investigate our native and naturalised flora”, said Thiele. This ongoing collecting and databasing makes AVH the most up-to-date reference data set for Australian botanical diversity.

The ALA is a partnership of Australian herbaria, museums, CSIRO, government agencies and other biological collections. The ALA is supported by the Australian Government through the National Collaborative Research Infrastructure Strategy (NCRIS) and the Education Investment Fund (EIF) Super Science initiative.

Further information

Kevin Thiele
Chair, Council of Heads of Australasian Herbaria
kevin.thiele@dec.wa.gov.au
0400 127 709

 

Fiona Brown
Communications Advisor, Atlas of Living Australia
fiona.brown@csiro.au
0403 509 864

 

Research links

Further information on the research by Mishler and colleagues is available at the Berkeley News Center: http://newscenter.berkeley.edu/2014/07/18/big-data-guides-conservation-efforts/, and the published research is available on the Nature Communications website: http://www.nature.com/ncomms/2014/140718/ncomms5473/full/ncomms5473.html.

David Richardson’s work is described in the journal Diversity and Distributions: http://onlinelibrary.wiley.com/doi/10.1111/j.1472-4642.2011.00824.x/abstract

Other examples of research utilising AVH can be provided on request.

 Images

Please contact Alison Vaughan (alison.vaughan@rbg.vic.gov.au, + 61 3 9252 2448) for image files.

Using AVH data on Australia’s acacias, researchers have identified areas of high genetic diversity where improved conservation efforts might preserve rare and endangered species. Image: Andrew Thornhill.

AVH map showing the distribution of the fungus Banksiamyces (red dots) and its host Banksia (blue dots), based on label data from specimens held in Australian herbaria. Image: Australia’s Virtual Herbarium (2014).

Banksiamyces macrocarpus, growing on cones of the Hairpin Banksia, Banksia spinulosa. Image: Geoff Lay CC BY-SA 3.0.

A herbarium specimen from which information has been digitised and made available in AVH for people to access anywhere in the world. This specimen of Banksia serrata, collected by Joseph Banks and Daniel Solander at Botany Bay in 1770, is held at the National Herbarium of Victoria at the Royal Botanic Gardens Melbourne. Image: Royal Botanic Gardens Melbourne.

 

 

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